This section defines terms used in the plugin output.

• Coverage Depth The minimum and maximum number of reads covering bases in the transcript. If coverage is 100%, the minimum value will be > 0.

• Coverage The number of base positions covered by at least one read.

• Start Sites The number of base positions that are the start site for a read.

• Unique Start Sites The number of start sites that have only one read starting at the site.

• Coverage CV Coefficient of Variation for coverage = average coverage / stddev coverage for the entire transcript.