Review pre-alignment metrics
When determining the quality of a run, first look at the unaligned metrics including: total bases, total reads, and mean and median read length. This information comes from the primary pipeline, base calling, and signal processing.
- In the Data tab, click Completed Runs & Reports , then select a report of interest.
-
In the Unaligned section, review Total Bases, Total Reads and Mean, and Median Read Length to determine the quality of the run.
For more information on these metrics, see Run report metrics before alignment.
