Ion S5™ and Ion Proton™ data
Ion S5™ and Ion Proton™ sequencer data is divided into these categories:
-
DataCollect - These items come from the instrument configuration file.
-
RunData - These items reflect parameters from the last Auto pH or sequencing run.
-
Status - These items reflect the current instrument parameters.
-
System - These items provide parameters related to the operating system supporting the instrument.
-
Version - These items provide the version numbers for the various software packages installed on the instrument.
In addition, two items (InstrumentState, Type) are not placed in any category.
The number and names of these entries are subject to change across software releases.
|
Data Item Name |
Type |
Sample value |
|---|---|---|
|
Alarm.* |
String |
Various hardware alarm messages |
|
BIOS.BIOS |
Analog |
5350 |
|
DataCollect.FlowsSinceClean |
Analog |
400 |
|
DataCollect.RunsSinceClean |
Analog |
1 |
|
Event.CleanCompleted |
String |
Clean completed |
|
Event.DatacollectStarted |
String |
Datacollect Started |
|
Event.InstrumentMustBeInitialized |
String |
Instrument must be initialized |
|
Event.PostRunCleanHasNotBeenRun |
String |
Post Run Clean has not been run |
|
InstrumentState |
String |
Idle |
|
RunData.a1a2 |
String |
R_2016_02_17_13_01_08_user_F4--145 W1.dat dffffe cntArry 9 0 0 9 |
|
RunData.AutoPhFinal |
Analog |
7.660635 |
|
RunData.AutoPhInitial |
Analog |
6.321023 |
|
RunData.AutoPhIterations |
Analog |
4 |
|
RunData.AutoPhResult |
String |
Pass |
|
RunData.AutoPhTotalW1Volume |
Analog |
1.0 |
|
RunData.ChipGain |
Analog |
1.066389 |
|
RunData.ChipPixelAverage |
Analog |
8241 |
|
RunData.ChipPixelsInRange |
Analog |
164698460 |
|
RunData.ChipPixelsPinnedHigh |
Analog |
0 |
|
RunData.ChipPixelsPinnedLow |
Analog |
676 |
|
RunData.ChipTemp |
Analog |
81.826172 |
|
RunData.CpuTemp0 |
Analog |
53 |
|
RunData.CpuTemp1 |
Analog |
74 |
|
RunData.efuse |
String |
**********L:Q6C841,W:4,J:WC2012C00086-C00272,P:16,C:PT4,F:F6,Y:4,X:0,B:3,SB:31,B:1P,N:343************************************* |
|
RunData.FpgaMasterTemp |
Analog |
113 |
|
RunData.FpgaSlaveTemp |
Analog |
118.4 |
|
RunData.GpuTempC |
Analog |
82 |
|
RunData.LastAutoPhRealPh |
Analog |
766 |
|
RunData.LastAutoPhRef |
Analog |
745 |
|
RunData.LastAutoPhTarget |
Analog |
770 |
|
RunData.R1pH |
Analog |
7.00 |
|
RunData.R2pH |
Analog |
7.00 |
|
RunData.R3pH |
Analog |
7.00 |
|
RunData.R4pH |
Analog |
7.00 |
|
RunData.W1pH |
Analog |
8762 |
|
RunData.W2pH |
Analog |
7619 |
|
RunData.W3RefpH |
Analog |
7.45 |
|
Status.HDPctFull |
Analog |
0.823612 |
|
Status.SsdPctFull |
Analog |
6.220454 |
|
System.CpuUsagePct |
Analog |
7 |
|
System.Date |
String |
2013-01-0 |
|
System.FreeMemoryKB |
Analog |
129951948 |
|
System.Hostname |
String |
d1.ite |
|
System.IpAddress |
String |
10.25.3.150 |
|
System.PhysMemTotalGB |
Analog |
128 |
|
System.Time |
String |
03:42:58 PM GMT |
|
TYPE |
String |
Proton1 |
|
Version.Datacollect |
String |
3371 |
|
Version.DiskImage |
String |
2015_06_04 |
|
Version.Graphics |
String |
80 |
|
Version.KernelRelease |
String |
3.13.9-ionrt1 |
|
Version.LiveView |
String |
2166 |
|
Version.OIA |
String |
5203 |
|
Version.OS |
String |
17 |
|
Version.Reader FPGA |
String |
3d400109 |
|
Version.Reader FPGA1 |
Analog |
33400109 |
|
Version.Reader Woddr FPGA |
String |
3400043 |
|
Version.Reader Woddr FPGA1 |
String |
340004b |
|
Version.RSM |
String |
24 |
|
Version.Scripts |
String |
2.0.63 |
|
Version.S5 Release |
Analog |
5.2 |
|
Version.S5 Script |
String |
0.1.13 |
|
Version.TSLink |
String |
1.0.2r5 |
|
Version.Valve FPGA |
String |
c010 |