The run report contains a short summary of plugin output. These summaries appear below the run report metrics and above the Output Files section.

To review the plugin results:

1. Click Plugin Summary near the top of the run report:

   

2. Click See plugin results above:

   

The variantCaller summary area is slightly different for barcoded and non-barcoded runs. In both cases, the summary section includes the following:

• Information about the analysis type, targeted regions and hotspot files, and variantCaller parameter settings.

• The total number of variants called.

• The variantCaller.html link to the results page.

• Download links:

  • The zipped VCF file of variant calls.

  • The Zipped VCF index file (required for IGV).

  • The results in a tab-separated file.