Torrent Suite Software 5.4 Help

Alignment quality

Alignment quality calculations include the following:

Metric

Description

AQ17

An error rate of 2% or less.

AQ20

An error rate of 1% or less.

Perfect

The longest perfectly aligned segment.

Total Number of Bases

Total number of bases at the quality level.

Mean Length

Average segment length at the quality level.

Mean Coverage Depth

Average coverage at the quality level.