Torrent Suite Software 5.4 Help

Review run results — variantCaller

After your sequencing run completes, review results on the Run Summary page.

  1. In the Data tab, click Completed Runs & Reports, then search for your run.
  2. Click the Report Name link to open the Run Summary screen for your run.
  3. In the Run Summary, click the Plugin Summary link, or scroll down to the Plugin Summary tab.

    The Plugin Summary lists any plugins that have completed analysis on your run.

  4. Scroll down to the variantCaller section.

    The variantCaller summary area is slightly different for barcoded and non-barcoded runs. In both cases, the summary section includes the following:

    • Information about the analysis type, targeted regions and hotspot files, and variantCaller parameter settings.

    • The total number of variants called.

    • The variantCaller.html link to the variantCaller plugin report.

    • Download links:

      • The zipped VCF file of variant calls.

      • The Zipped VCF index file (required for IGV).

      • The results in a tab-separated file.

Parent topic: Output from the variantCaller plugin