The PGxAnalysis plugin analyzes sequencing output from the Ion AmpliSeq™ Pharmacogenomics panel, a hotspot panel that interrogates pharmacogenomics variants in samples for genotyping and CYP2D6 copy number detection.

The figure below describes the pipeline of analyses.

For details about how to set up Torrent Suite™ Software Planned Runs that incorporate the Ion AmpliSeq™ Pharmacogenomics template and the PGxAnalysis plugin, see the following documents:

• https://tools.thermofisher.com/content/sfs/manuals/MAN0014300_CustomizGuidelines_IonAmpliSeqPharm_UB.pdf

• • https://tools.thermofisher.com/content/sfs/manuals/MAN0013730_CreatePlannedRun_IonAmpliSeqPharm_UB.pdf