Customer Support Archive contents
The tables in this section describe the files included in a Customer Support Archive. Files for optional modules (such as recalibration) only appear if the optional module is run.
In the basecaller_results directory:
File |
Description |
---|---|
Log file for the basecaller analysis module |
|
A JSON-format file of the settings needed for basecaller to analyze the sample data |
|
A JSON-format file of the settings needed by the pipeline to run the basecallermodule |
|
A JSON-format file of the settings needed for basecaller to analyze the Test Fragments |
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A quality summary of basecaller unaligned reads/bases after filtering and trimming |
|
Same as above, but with a predictable file name |
|
A JSON-format file ofTest Fragments results statistics |
In the basecaller_results/recalibration directory:
File |
Description |
---|---|
Log of the TMAP alignment process during base recalibration |
|
Log file from the TMAP analysis module |
In the basecaller_results/unfiltered.trimmed directory:
File |
Description |
---|---|
Log of the TMAP alignment process based on unfiltered and trimmed reads |
|
Text format summary of sample alignment results for unfiltered and trimmed reads |
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Text format summary of sample alignment results for unfiltered and trimmed reads(same as above, but with a predictable file name) |
|
A JSON-format file of the settings needed for basecaller to analyze the sample data, when generating the raw BAM file |
|
The basecaller unfiltered and trimmed reads/bases quality summary |
|
The basecaller unfiltered and trimmed reads/bases quality summary (same as above, but with a predictable file name) |
In the basecaller_results/unfiltered.untrimmed directory:
File |
Description |
---|---|
Log of the TMAP alignment process based on unfiltered and trimmed reads |
|
Text format summary of sample alignment results for unfiltered and untrimmed reads |
|
Text format summary of sample alignment results for unfiltered and untrimmed reads(same as above, but with a predictable file name) |
|
A JSON-format file of the settings needed for basecaller to analyze the sample data, when generating the raw BAM file |
|
The basecaller unfiltered and untrimmed reads/bases quality summary |
|
The basecaller unfiltered and untrimmed reads/bases quality summary (same as above, but with a predictable file name) |
In the sigpror_results directory:
File |
Description |
---|---|
analysis.bfmask.stats |
Analysis statistics of wells in the bead find stage (the bfmask is a set of bit flags for each well, indicating the contents of each well) |
ATCG key signal measurements |
|
TCAG key signal measurements |
|
Summary statistics of wells in the bead find stage |
|
Parameter settings for analysis signal processing |
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Matrix data to separate between live wells and empty wells during bead find phase |
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Matrix data to separate between live wells and empty wells |
|
Log file for the analysis module |
In the sigpror_results/dcOffset directory:
In the sigpror_results/NucStep directory:
The files in this folder contain background model parameter values based on the location of the well in the chip.