Variant Type

SNP Single nucleotide polymorphism

IND Insertion

DEL Deletion

MNP Multiple nucleotide polymorphism

COMPLEX Complex block substitution

Allele Source

Hotspot if called only because of its entry in a hotspots file

Novel all others

Allele Name

The Allele name as given in the target regions file

Gene ID

The Gene ID as given in the target regions file

Region Name

The regionname as given in the target regions file