FASTQ file format generation
The FASTQ file format is not produced by the default analysis pipeline.
The FileExporter plugin generates files that use the FASTQ format that contain data that is organized in a per-base basis, including quality scores. The reads contained in the file are unaligned reads.
Note:
The FASTQ files that are created by the FileExporter plugin can be downloaded after a sequencing run that uses the plugin. For details on how to download the files, see FileExporter plugin.