coverageAnalysis plugin
Use the coverageAnalysis plugin to view statistics and graphs that describe the level of sequence coverage produced for targeted genomic regions. The Run Summary results are based on the Library Type that you select when you configure the plugin. For example, plugin reports for runs that use the Ion AmpliSeq™ DNA library contain the most information; plugin reports for runs that use whole-genome references will not have as many plots. You can export some charts as graphics, such as the Amplicon and Reference Coverage charts. You can also zoom in and out on many of the plots and graphs.