Download files and other actions

Field	Button	Description
Targeted regions	BED	Downloads the input targeted regions BED file (if any).
Hotspot regions	BED	Downloads the input hotspots BED file (if any).
Parameters Settings	Parameters File	Downloads a JSON text file of the the variantCaller plugin parameter values used on this run. Note: You can edit this file and later upload it to set your custom parameters in subsequent runs.
Mapped Reads	BAM, BAI	Downloads the BAM file (and its index) of mapped reads. This file is input to the variantCaller plugin.
Variant Calls	VCF.GZ,VCF.GZ.TBI,XLS	Downloads files of the variants calls: VCF.GZ,VCF.GZ.TBI: Zipped VCF file and its tabix index fileXLS: Tab-separated values file
Open Variants Calls in IGV	IGV	Link to open the results variants in the Integrated Genomic Browser (IGV).
Deprecated Features	Classic	Opens the plugin results page in the previous format.