Torrent Suite Software 5.4 Help

Download files and other actions

Field

Button

Description

Targeted regions

BED

Downloads the input targeted regions BED file (if any).

Hotspot regions

BED

Downloads the input hotspots BED file (if any).

Parameters Settings

Parameters File

Downloads a JSON text file of the the variantCaller plugin parameter values used on this run.

Note:

You can edit this file and later upload it to set your custom parameters in subsequent runs.

Mapped Reads

BAM, BAI

Downloads the BAM file (and its index) of mapped reads. This file is input to the variantCaller plugin.

Variant Calls

VCF.GZ,VCF.GZ.TBI,XLS

Downloads files of the variants calls:

VCF.GZ,VCF.GZ.TBI: Zipped VCF file and its tabix index fileXLS: Tab-separated values file

Open Variants Calls in IGV

IGV

Link to open the results variants in the Integrated Genomic Browser (IGV).

Deprecated Features

Classic

Opens the plugin results page in the previous format.