Torrent Suite Software 5.4 Help

Barcode-aware Torrent Variant Calling

the variantCaller plugin manual launch now allows configuring and analyzing barcodes individually and in a customized manner. Every barcode can be associated with its own “configuration” that consists of Reference Genome, Target regions file, Hotspot file, the variantCaller plugin parameters JSON file, and TMAP parameters (remap if different from mapped BAM). In Torrent Suite™ Software v5.0, this feature is available today only via manual launch of the variantCaller plugin - not from run planning. On a completed run, select the variantCaller plugin to rerun. Then, select the Setup tab and customize parameters.