Reference & Barcoding settings

The References tab contains these settings:

Setting	Description
Default Alignment Reference	The genomic reference to align to. Use this menu to change the reference used for alignment in the new analysis.
Default Target Regions BED File	Targeted regions of interest file. Analysis is restricted only to regions listed in this file.
Default Hotspot Regions BED File	Hotspots file. The variant caller includes each hotspot position in its output VCF file. Variant caller filter scores are provided for each hotspot position that does not have a variant called.
Barcode Set	The DNA barcode set.

Select specific references for specific sample barcodes.