The ampliSeqRNA plugin is used with the Ion AmpliSeq™ Transcriptome Human Gene Expression Kit, Ion AmpliSeq™ RNA panel, and custom RNA panels. The plugin generates statistics, downloadable data files, and interactive visualizations that represent targeted RNA transcripts.

Use the ampliSeqRNA plugin on runs that are aligned to the hg19_AmpliSeq_Transcriptome_ERCC_v1 reference (or a subsequent version) and appropriate targets panel, such as hg19_AmpliSeq_Transcriptome_21K_v1.