This page describes the parameters for the TMAP
mapvsw module. The
mapvsw module implements a vectorized implementation of Smith-Waterman.
Note:
The
mapvsw module is not the current default for TMAP.
Options supported with the TMAP
mapvsw module (all are optional):
|
Option
|
Type
|
Default
|
Description
|
|
--min-seq-length
|
INT
|
-1
|
The minimum sequence length to examine (-1 to disable)
|
|
--max-seq-length
|
INT
|
-1
|
The maximum sequence length to examine (-1 to disable)
|
