TMAP Modules

The Torrent Mapping Alignment Program (TMAP) is a sequence alignment software program optimized specifically for Ion Torrent™ data. TMAP contains several mapping algorithms, each with its own best application. TMAP's current default is map4.

When you reanalyze a run, you can optionally change both the TMAP module ( map1, map2, map3,map4, or mapvsw) and also change the module's parameters.

Note:

The default TMAP parameters are tuned for Ion data. In most cases, you do not need to modify these settings. Modifying these parameters is recommended for advanced users.