IonReporterUploader plugin configuration

The following settings are configured when you set up accounts for the IonReporterUploader plugin:

Setting	Description
Server Type	Enable HTTPS.
Display Name	Enter a name of your choice. This name can be selected when a run plan template is created or edited and is visible to other Torrent Browser users. Use only the alphanumeric, dash, underscore, and space characters.
Server	Enter: 40.dataloader.ionreporter.iontorrent.com
Port	Enter: 443
Username	Enter your Ion Reporter™ Software username (your email address)
Password	Enter the password you use to Sign in to Ion Reporter™ Software
Default	Enable if this account is for automatic analyses in Ion Reporter™ Software.
Version	Select the version for use with each account.

The following settings can be configured when you run the IonReporterUploader plugin manually:

Note:

You can now select barcodes for the samples or samples that were used in the sequencing run. By selecting these barcodes, you can select which samples that you want to upload to Ion Reporter™ Software.

Setting	Description
Barcode Sample Settings	Select the barcodes for the sample or samples used in the sequencing run that you want to upload to Ion Reporter™ Software.
Select Ion Reporter™ Software account	Select the Ion Reporter™ Software account that you will use to upload files to Ion Reporter™ Software
BAM	Select to upload BAM files only
VCF	Select to upload VCF files only
BAM and VCF	Select to upload both BAM and VCF files
Number of Parallel Streams	Set the Number of Parallel Streams to Default (the recommended optimal speed) or select 1-5 to slow down upload
File Segment Size	Set File Segment Size to Default (recommended), or 16MB, 32MB, 64MB, or 128MB