Review pre-alignment metrics

Introduction

Review alignment metrics

ISP density

Download results set

ISP summary

Manually run a plugin on the run results

Read length

Review the planned run settings

Key signal

Review the test fragments and their quality metrics

Output files

Run metrics overview

Review Chef Summary

Predicted quality (Q20)

Review calibration report

Quality following alignment (AQ20)

Review analysis information

Compare run reports

Tune Ion Reporter Uploader speed parameters